You'll have to check the BIOS or jump into the boot options (on boot if available) to make sure it will boot from the floppy or CDs prior to the hard drives. If it is skipping either, then the hard drive is set as the primary boot device. (pretty much what baraka guru said)
This is probably going to be where you are slapping one of the function keys at boot (usually f2, f8, f9, f10, or f12)
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