Quote:
Originally posted by Mr.Deflok
Well you're downloading your brain per se into the Matrix when you jack-in which in turn becomes it's own program inside the Matrix, Smith takes over this program in a viral manner and your program is uploaded to your real brain via the jack-port.
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I think that its important to note that the only reason that Smith can "jack" into Bane is because Zion is really just another matrix. If Zion wasn't a matrix then I don't think that Smith could jack out.