When this happens to you, it's best to use the disk that came with your iPod and do a complete restore on it. Note that this will wipe off all the music/files/whatever else you have on there, but there are ways of getting those things off beforehand...
Anyhow, use the utility, load it back up, if it happens again hope that it is under warranty still and take it in. There are a few sites on the web that show you how to get to a harddrive test for the iPod, but i've found it doesn't always find everyone's problems.
Good luck!
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