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Theoretically, PCI-E has a huge advantage over AGP in terms of technology. As of now, PCI-E technology isn't helping out videocards much at all. It will in the future, but right now, AGP videocards perform just as well. You could buy an AGP or PCI-E motherboard and be fine. And I suggest the GeForce 6800 GT over the X800 Pro if you're gonna go the AGP route.
-Lasereth
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"A Darwinian attacks his theory, seeking to find flaws. An ID believer defends his theory, seeking to conceal flaws." -Roger Ebert
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