Normally I would have never thought of this except that it just happened to my roommate this month: basically same situation where she was missing a period and none of the above applied (medications, athletics, stress...) and her pregnancy test turned up negative. Well then come yesterday she had to go to the ER with sudden horrific pains in her sides and it turns out she has cysts on her ovaries. It's fairly common in girls between the ages of 16-40. It was just an idea you might want to look into.
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