Tilted Forum Project Discussion Community  

Go Back   Tilted Forum Project Discussion Community > The Academy > Tilted Philosophy


 
 
LinkBack Thread Tools
Old 12-28-2004, 05:17 AM   #1 (permalink)
zen_tom
Guest
 
Artificial Life

This Article from BBC News

Quote:
Researchers at Rockefeller University in the US have made the first tentative steps towards creating a form of artificial life.

Their creations, small synthetic vesicles that can process (express) genes, resemble a crude kind of biological cell.

The parts for their "vesicle bioreactors", as they call them, all come from diverse realms of life.

The soft cell walls are made of fat molecules taken from egg white. The cell contents are an extract of the common gut bug E. coli, stripped of all its genetic material.

This essence of life contains ready-made much of the biological machinery needed to make proteins; the researchers also added an enzyme from a virus to allow the vesicle to translate DNA code.

When they added genes, the cell fluid started to make proteins, just like a normal cell would.

A gene for green fluorescent protein taken from a species of jellyfish was the first they tried. The glow from the protein showed that the genes were being transcribed.

With a second gene, from the bacterium Staphylococcus aureus, the researchers got their cells to make small pores in their walls.

These let nutrients in from the surrounding "soup", so that the cells could function, in some instances, for several days.

Albert Libchaber, who heads the project, stresses that these bioreactors are not alive - they're performing simple chemical reactions that can also happen in cell-free biological fluids.

But the research is one strand in a new field called synthetic biology, where the aim is to re-design entire organisms, or recreate them from scratch.

The bio-entrepreneur Craig Venter, who headed the commercial venture to decode the human genome, is currently trying to strip a bacterium down to the minimum set of genes needed for survival.

Two years ago, another team showed that polio viruses could assemble themselves from off-the-shelf chemical components mixed in a test-tube.

And several chemists are exploring the kinds of chemical reactions that may have preceded life.

Albert Libchaber's hope is to build up towards a minimal synthetic organism, with a designed cell wall, and a mixture of gene circuits that would let it maintain itself like a living cell.

As these constructs become more lifelike, the rest of us will have to start rethinking the nature of life.

"This is rather philosophical," says Dr Libchaber.

"For me, life is just like a machine - a machine with a computer program. There's no more to it than that. But not everyone shares this point of view," he told the BBC.

He also stresses that there is no danger in the experiments. Not only are his cells artificial, they can function only in the nutrient medium he supplies them.

He said: "If you take our system out of its environment, it just doesn't function."

Details of Libchaber's work with Vincent Noireaux have been published by the journal Proceedings of the National Academy of Sciences.
My personal take on this? I'm excited - Firstly by the news that it has been shown that life can indeed self-assemble from a chemical 'soup' and more so by the notion of designing cells that could be used to solve everyday problems in highly efficient and more organic ways. City liver anyone? Other uses might be the production of chemicals and enzymes to be used in medicine, among many many other exciting ideas.

Last edited by zen_tom; 12-29-2004 at 06:14 AM..
 
Old 12-28-2004, 05:44 AM   #2 (permalink)
Tilted
 
Have you read Michael Creighton's "Prey"? Similar premise with scary consequences.
__________________
Never practice moderation to excess.
mxyzptlk is offline  
Old 12-28-2004, 06:59 AM   #3 (permalink)
zen_tom
Guest
 
No I havn't, though I do remember something in William Gibson's Idoru where a part of the Tokyo skyline was being transformed by some form of nanotechnology that was being used to erect new cheap housing - it was just a background element though, and nothing horrendous occured.
 
Old 12-28-2004, 07:29 AM   #4 (permalink)
Tilted
 
Location: USA
I agree with you zen_tom about this being good research for life assembling itself from a chemical soup. It shows that it is possible, not just an idea.
typhus is offline  
Old 12-29-2004, 12:21 AM   #5 (permalink)
Tilted
 
Location: New York
That's really interesting. Does anyone have any more information on this?
__________________
--Cataklysm--
cataklysm is offline  
Old 12-29-2004, 04:30 AM   #6 (permalink)
Lak
Insane
 
Location: New Zealand
Now THATS cool. And assembling a polio virus from standard issue chemicals, thats just way, way cool.
COOOL.
Can't wait to see where they go with it, maybe we'll have some kinda artificial bloodstream-dwelling cells that regulate insulin for diabetics? That'd be wicked hot.
On thought, they would probably get destroyed by antibodies just for being there... maybe theres a way to grow the artificial cell from a particular host dna.... hmmm.
I'm not very well versed in biology... I could be talking shit.
Failing to think of more practical applications.... anyone?
__________________
ignorance really is bliss.
Lak is offline  
Old 12-29-2004, 06:13 AM   #7 (permalink)
zen_tom
Guest
 
I was thinking of industrial applications in the chemical industries - these things are basically tiny triggerable chemical factories.

So you can use them to produce chemicals in ways and places that you couldn't do before, or where the introduction of bacteria might cause problems.

One thing might be a special form of plastic seeded with these things that liquefies in the presence of an enzyme. Add another enzyme and the plastic hardens again. So in the recycling centre, you spray the enzyme onto the rubbish, the plasitc dissolves and is collected in a pit on the floor, cleaned, sent to the bottle factory, poured into moulds, given a dose of the hardening enzyme and pop, there's a new bottle.

Or you could develop cells that secrete calcium carbonates (borrowed from corals, or shelled molluscs) in order to build (grow) structures that wouldn't require workmen except for wiring or plumbing etc.

Later versions of these cells might be able to change shape in response to an electrical signal, the way muscle cells do. These types of cells could be used in machenery that mimiced the mechanics of the body.

The possibilities are pretty vast - I suspect though that currently they are difficult to produce in large numbers - a problem that might be solvable if they were built to self-replicate in addition to their other functions. What might happen then? A whole new branch of life?

Last edited by zen_tom; 12-29-2004 at 06:16 AM..
 
Old 12-29-2004, 07:16 AM   #8 (permalink)
Insane
 
Location: st. louis
i think yu guys are going a bit far with this. these are brety limited structures and they don't have any DNA according to the article. all that they are capable of doing is to express a single protein/enzyme. it is much harder to enginer an entire organism because you have to work with a lot of genes, humans have 30,000 genes but we use at least 100,000 proteins/enzymes. this means we have genes that code for more than one protein. also i wouldn't call this artifical life as muc as i would call it a new species, because unless i am misunderstanding the article all they did was create a cell wall, take the organelles from e coli and then strip the genetic information so they could produce whatever they want. they didn't create anything artifical they just recombined what already existed.
__________________
"The difference between commiment and involvment is like a ham and egg breakfast the chicken was involved but the pig was commited"

"Thrice happy is the nation that has a glorious history. Far better it is to dare mighty things, to win glorious triumphs, even though checkered by failure, than to take rank with those poor spirits who neither enjoy much nor suffer much, because they live in the gray twilight that knows neither victory nor defeat." Theodore Roosevelt
fuzyfuzer is offline  
Old 12-29-2004, 10:32 AM   #9 (permalink)
zen_tom
Guest
 
They are machines that construct complex proteins from the ingredients in the viscinity based on the blueprint found on an injected strand of DNA. Yes it is very basic(compared to what we're used to seeing in nature), and yes they are constructed from pieces farmed from elsewhere.

An analogy might be that each of these machines is like a cassette player (with no buttons) that plays the song of whatever cassette is put inside them once its plugged in.

The next step is to allow the cassette player to read longer tapes containing instructions (fast forward, rewind etc) as well as songs that respond to more complex button pushing from outside.

The analogy breaks down at the next step, since that would involve the cassette player reading the instructions on the DNA that tell it how to build another cassette-
player containing the blueprint cassette.

So 'life' may too strong a term, perhaps 'machines mimicing the processes of life' is more fitting. I do see the boundaries blurring considerably as more complex versions of these things are developed. In my opinion, this could be the start of an exciting new technology that really could change the world.
 
Old 12-29-2004, 02:54 PM   #10 (permalink)
Sky Piercer
 
CSflim's Avatar
 
Location: Ireland
Quote:
Originally Posted by fuzyfuzer
i think yu guys are going a bit far with this. these are brety limited structures and they don't have any DNA according to the article. all that they are capable of doing is to express a single protein/enzyme. it is much harder to enginer an entire organism because you have to work with a lot of genes, humans have 30,000 genes but we use at least 100,000 proteins/enzymes. this means we have genes that code for more than one protein. also i wouldn't call this artifical life as muc as i would call it a new species, because unless i am misunderstanding the article all they did was create a cell wall, take the organelles from e coli and then strip the genetic information so they could produce whatever they want. they didn't create anything artifical they just recombined what already existed.
A journey of a thousand miles begins with a single footstep.


You could take the precursor to pretty much any modern technology, look at it in its crudest, clunkiest form and scoff at it.
__________________
CSflim is offline  
Old 12-29-2004, 03:11 PM   #11 (permalink)
Crazy
 
Quote:
I'm excited - Firstly by the news that it has been shown that life can indeed self-assemble from a chemical 'soup' and more so by the notion of designing cells that could be used to solve everyday problems in highly efficient and more organic ways
I agree with the latter, but not necessarily with the former. The chemical 'soup' that we're thinking of is a set of already-complex and semi-ordered molecules. Even if science could manage to get these primitive cells to self-replicate, this new discovery in no way lets us claim that life can arise spontaneously from random components, since the alleged soup had an intelligent scientist choosing a specific chemical composition. Of course, if this is not what zen_tom meant in making this statement, then I'll just sit down and be quiet.

As to the designer cells.....that would be excellent. It would be a great opportunity to learn much about life and its complexity.
archpaladin is offline  
Old 12-30-2004, 05:34 AM   #12 (permalink)
zen_tom
Guest
 
The soup of complex molecules from which life is thought to have emerged is something that brings itself about naturally. How? Because the reactions that produce those types of molecules are catalysed by the products of those reactions. In simple terms(I hope), complex molecules are more likely to be catalysts for the formation of molecules similar, or more complex than themselves, and because of this, any formation of such a self-catalysing molecule will propagate itself rapidy through the system, providing the chances for further degrees of complexity to occur, which will then further propagate, specialise and in turn add a new level of complexity...and so on.

Order comes for free in this universe.
 
Old 12-31-2004, 01:43 AM   #13 (permalink)
Junkie
 
Stiltzkin's Avatar
 
Quote:
Originally Posted by zen_tom
Order comes for free in this universe.
I think the laws of thermodynamics would disagree.

Unfortunately, I don't know enough about biology (yet) to say anything more than has already been said.
__________________
The most important thing in this world is love.
Stiltzkin is offline  
Old 12-31-2004, 06:14 AM   #14 (permalink)
zen_tom
Guest
 
Damn those laws of thermodynamics!

No but seriously, the auto-formation of increasing layers of complexity is something that temporarily flouts the laws of thermodynamics every day. Every time I pour a fresh cup of coffee, the lawyers in the court of thermodynamics leap up and shout 'Objection!' - and yes, they'll get me in the end, but not while I'm still alive and breathing.
 
Old 01-03-2005, 08:13 PM   #15 (permalink)
Tilted
 
Location: Pensacola, Florida
My question is; once alive, is it still artificial?
mike059 is offline  
Old 01-03-2005, 08:41 PM   #16 (permalink)
Insane
 
Location: Ithaca, New York
Quote:
Originally Posted by zen_tom
Damn those laws of thermodynamics!

No but seriously, the auto-formation of increasing layers of complexity is something that temporarily flouts the laws of thermodynamics every day. Every time I pour a fresh cup of coffee, the lawyers in the court of thermodynamics leap up and shout 'Objection!' - and yes, they'll get me in the end, but not while I'm still alive and breathing.
Huh? Reference? Link?
As far as I know, the laws of thermodynamics are inviolable.
__________________
And if you say to me tomorrow, oh what fun it all would be.
Then what's to stop us, pretty baby. But What Is And What Should Never Be.
fckm is offline  
Old 01-05-2005, 02:31 PM   #17 (permalink)
Sky Piercer
 
CSflim's Avatar
 
Location: Ireland
Quote:
Originally Posted by fckm
Huh? Reference? Link?
As far as I know, the laws of thermodynamics are inviolable.
It's true. They are.
But in a very simplified manner: you absorb low entropy energy from the sun (or eat somehting which did this, or eat something which ate somehting that did this, or....)
Any energy you then release back into the environment is in the form of high entropy energy.
So though you appear to be "temporarily flouting the laws of thermodynamics", nature ensures that all of the check and balances are in place so that the environment pays the penalty.
The laws of thermondynamics only hold rigourously in a closed system, and you are not a closed system. You interact with your environment.
__________________
CSflim is offline  
Old 01-05-2005, 04:29 PM   #18 (permalink)
zen_tom
Guest
 
The second law of thermodynamics states that over time, entropy increases, and ordered systems decrease.

So for example it's easier to break an egg than it is to put the pieces back together again; a concentration of heat in a pan will tend to dissipate into the air if left off the stove; and the pure gin will dissipate into the tonic water from the moment it is poured into the glass, as will the water from the melting ice.

What the second law tells us is that our bodies will wear out and die, that our strongest constructions will crumble, that our hard-drives will eventually crash.

However, while nature imposes these restrictions on life, purity, order and tidyness, it also, in the realms of self-organising processes, provides a means of countering these effects. The egg must be laid before it has a chance to be broken, the pan heated before it is allowed to cool, and the gin distilled before it has a chance to addle our conciousness. While those processes appear to be artificial and not of scientific interest, they are real natural processes (albeit of a higher order of complexity than our scientists prefer when doing their sums)

The universe creates order through the simplest of means - it turns out that some forms of organisation in turn help the formation of similar forms of organisation. Crystals form around a seed, planets form from within clouds of dust, stars ignite and provide energy to fuel organic reactions - at each step, the second law is being *temporarily* ignored.

If the universe is a closed system, and if the second law of thermodynamics is correct (and if our assumptions about time are correct), then our future will end as an amorphous, mixed-up place with no centre, no organisation, no concentration of anything that could be considered a feature. Some people think that a black-hole is an alternate description of a high-entropy system, but I don't know enough about that to comment.

However, there is this unrefutable ability of nature to balance it's own destructive power with this counter, organising, building one. We're living in a world where organisation is winning over disorganisation. Individually yes we all continue to die, but if the trend that we see on Earth could be applied to the rest of the universe (and this is a very iffy supposition to make) and organisation and self-replication continues to thrive in a universe that slips into disorder so readily, might the constructive force eventually outweigh the destructive one?

I know, it's late and this is starting to sound mystical, but coming back down to earth - my point is that if the 2LoTD says that things tend to disorder, there ought to be another law that describes this evident property of things to spontaneously order themselves. Here on earth that second property isn't doing too badly at all.
 
Old 01-05-2005, 05:24 PM   #19 (permalink)
Addict
 
CandleInTheDark's Avatar
 
Location: Where the music's loudest
Lets just say that I'm thinking about a doctorate in biology now.
__________________
Where there is doubt there is freedom.
CandleInTheDark is offline  
 

Tags
artificial, life


Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are On
Pingbacks are On
Refbacks are On



All times are GMT -8. The time now is 01:04 AM.

Tilted Forum Project

Powered by vBulletin® Version 3.8.7
Copyright ©2000 - 2024, vBulletin Solutions, Inc.
Search Engine Optimization by vBSEO 3.6.0 PL2
© 2002-2012 Tilted Forum Project

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360