Are you still having pain? How long has it gone on? Do you or have you had a fever? The only thing I can think of is that she thought perhaps you have a bladder infection and just wanted to be sure it didn't get worse. I would be leary of taking Cipro myself is she wasn't absolutely sure you had an infection. Not only are there the side effects to consider but it also will kill all the bacteria in your body good and bad. If you are exposed to a bacterial infection soon after finished the meds then you will be more susceptible to it. It can also make the bacteria more antibiotic resistant. I agree I wouldn't want to take it either. I suggest you call her though and ask if she really thinks this is necessary. If she didn't find anything then you shouldn't need it. If she did find something and that's why she prescribed it for you then she needs to make sure you know all the results and why she made her decision. She needs to communicate with you though. She shouldn't be handing out antibiotics randomly as it may seen she has. Don't just not take it though. Check with her too. Good Luck.
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