Didn't Neo die at the end of the first Matrix movie and come back? What makes everyone think he is actually dead?
Also, I thought that the destruction of all the humans and the matrix was an acceptable alternative when Neo chose to save Trinity. (at least that is what I thought the architect more or less said LOL). Why didnt the machines simply shut the matrix down thus destroying Smith and everyone else.
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"Behold the turtle. He makes progress only when he sticks his neck out.” ~ James Bryant Conant
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