Someone will no doubt call me on this, but it sounds as though it may have been a hard drive sector failing.. i doubt bittorrent was the culprit in and of itself, perhaps in allocating a large chunk of space for your download it wrote on the bad sector, making things apparent...
honestly, one guess is as good as the next. you may want to run some system tests if you get a chance, stress test the hdd/processor/ram.
if anyones run into a similar problem, post away, as its evident that i, in fact, have got nuttin, as it were.
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