I don't know what the Music is either, but it's a calling card if you're a romantic or a Transmission if you're paranoid.
I suspect it has to do with how the Cylons are tracking the fleet and is tied to the psychic bond between Six and Baltar. It was the one question left unanswered by Six during Ol' Patch-Eye's interrogation, and that's when he first heard the music, no?. It's his storyline to resolve and figuring out the connection can be his redemption.
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Building an artificial intelligence that appreciates Mozart is easy. Building an A.I. that appreciates a theme restaurant is the real challenge - Kit Roebuck - Nine Planets Without Intelligent Life
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