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Florida0214, there's the very simple explanation that the first doctors were wrong.
The human immune system is very strong, and actually there are a very small percentage of people immune to AIDS that they are currently working on seeing if they can 'copy' their immune system to create a vaccine. I'd imagine that there are some people who can handle free radicals or carcinogens and other cancer-causing agents...perhaps your friend was one of these. Also, there are many examples of people making 'miraculous' recoveries from fatal diseases - its not the norm by far, but it definitely happens.
So, no, it's not certain that it was supernatural, but it's a nice possibility if that's your cup of tea. Personally I think it's entirely possible.
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