I don't know about SuSe, but when I installed Mandrake, it let me pick how I would setup the drives. I have my 300 gig as Linux, and my 120 stayed as XP. It should be similar for you during setup. Just pick which drive will be Linux and it should leave the rest alone.
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"Fuck these chains
No goddamn slave
I will be different" ~ Machine Head
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