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Why dont you just extend the vector class to add magnitude, dot, and cross methods?
I do agree with you 100% on the vector being a poor choice. I recently coded a matrix class with gaussian reduction, but I didnt run into this. I wish the math class in every language went beyond highschool level mathematics.
Still, I think java used an arrayList, so java is better in this instance. However, I now end up doing everything in XML, XSD, XSLT, and SVG. I create file or strings, and an engine does all the processing. Not really fun, but there are a lot of options for creative solutions....so its not so bad.
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