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Well, I recently had a HUGE problem with my C:\ getting fscked. It ended up being the Windows Indexing Service that was eating it away. You may not get all the space back, but going into the Services CP (from Administrative Tools) and Stopping then Disabling the Indexing service may prevent future issues like this. Also, is the C:\ drive where your swap/VM space is? If so, I HIGHLY recommend moving it elsewhere. And if you are using PATA drives (not serial ATA), then make sure it's on one of the two drives that are NOT on the same cable as your C:\ drive. This will increase performance, and also clear up some space on your C:\.
Hope something here helped.
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