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I second cyrnel's recommendation on WinSCP. I use it to move stuff back and forth between my machine and my linux servers. Easy to use and you can choose between the Norton Commander interface (better) or the Explorer interface (sucks).
If you're looking for vulnerabilites in the FTP server software you're using, you might look at securityfocus or google to see what vulnerabilites are out there for the program. If you want more help, private message me and we'll see what we can work out, as network security is my forte.
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"You hear the one about the fella who died, went to the pearly gates? St. Peter let him in. Sees a guy in a suit making a closing argument. Says, "Who's that?" St. Peter says, "Oh, that's God. Thinks he's Denny Crane."
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