You can get some cheap (all relative I know) drive cooling systems. They mount in a drive bay (hopefully put one between every 2 drives) and hook up to a molex.
2 small fans, one blows up and one blows down to help cool the drives. I don't have one myself, but I am right on the cusp of requiring one.
I forget where I found them, but I think they were by Thermaltake.
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