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Yep. I had a budding case of RSI (aka Carpal Tunnel Syndrome) and what you describe sounds a lot like that.
It hurt on the pinky edge of the palm of my hand. I had it mostly in my right hand. My hands would be very different temperatures and colors a lot of the time--my right cold and pale, my left warm and pink. For a while I quit using my right pinky entirely. I still 'backspace' with my right ring finger...
Something about my change of office fixed it; before long I noticed it wasn't there anymore. Can't quite explain it.
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