Perhaps I did something wrong all three times I've used Partition Magic to try and do anything to my boot partition (windows partition), but every time I've done it, it's screwed up my boot sector and I've ended up repairing/formatting windows. I would advise that if you use Partition Magic, make sure you absolutely know you're not going to screw it up. For non-system partitions, PM works like a champ, but I've had bad luck with using it on my boot partition.
Just my 2c.
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If you're flammable and have legs, you are never blocking a fire exit. - Mitch Hedberg
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