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I'm not exactly sure what you're saying either...
I'm assuming the bittorrent folders which you moved to the new HD are incomplete and you want to resume downloading off of them. I use Burst! which lets you choose where you want to save your files to (Other clients should also let you choose). Just right-click, open up your torrent, and a box will pop up asking where you want to save it to. Just redirect it to the folder on the new HD.
If you just want to download the .torrent file to the new HD, right-click, save as, and direct it to the new drive.
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