What you're asking is theoretically possible, however it would be a complete bitch.
Like RageAngel said, you'd need to redirect the MBR (master boot record) and move the function of the ntldr file onto the other drive. By the time that you got done fiddling with it, assuming that it ever worked right because of the changes you've made to all of your paths, it probably would've been better to have started out reformatting the machine and saving yourself the trouble.
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