The only thing I can suggest is the beginning of the hardware-exchange process. I'd try to find another motherboard to use first. Just switch every component in the system until it stops doing it. It sounds tedious but it's really one of the fastest ways to find out what's wrong with the system. If you don't have extra components, just take out individual pieces that aren't needed (like the extra HDD, CD-ROM, some RAM, etc.) and see if it fucks up without those pieces in.
-Lasereth
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"A Darwinian attacks his theory, seeking to find flaws. An ID believer defends his theory, seeking to conceal flaws." -Roger Ebert
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